PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001392G0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 248aa    MW: 25794.8 Da    PI: 4.8383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001392G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.3e-184693152
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  PH01001392G0010 46 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 93
                     57*****998.**********843...6*********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-1946105No hitNo description
PfamPF008471.3E-124693IPR001471AP2/ERF domain
PROSITE profilePS5103223.03747104IPR001471AP2/ERF domain
SMARTSM003803.0E-3447110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3147106IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2147105IPR016177DNA-binding domain
PRINTSPR003673.4E-104859IPR001471AP2/ERF domain
PRINTSPR003673.4E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MPEQEVCSPA SSGGASSSPP ASPVQGERRG GGGGGEKRAR DGGRHPSYRG VRMRAWGKWV  60
SEIREPRKKS RIWLGTFPTP EMAARAHDAA ALVVKGPAAV LNFPDMAAAL PRPASAAPRD  120
VQAAAARAAA MEPSLHQDPA AAAVAAALLP PASAPAKPTP KNCAPADDEL EAIFELPRLD  180
EDAAEPVFGA ASFHDVTPAD QSWCDPVWID DDGYAAHDDL FGLGLGLDLD ADYHGWGQSV  240
GALLWNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-1543104363ATERF1
3gcc_A9e-1543104363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036821e-115AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149621e-115AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624743.16e-88PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9LYD32e-50DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0E0NC406e-88A0A0E0NC40_ORYRU; Uncharacterized protein
TrEMBLI1NYR56e-88I1NYR5_ORYGL; Uncharacterized protein
TrEMBLQ6ETB06e-88Q6ETB0_ORYSJ; Putative AP2 domain-containing protein
STRINGLOC_Os02g13710.12e-87(Oryza sativa Japonica Group)
STRINGORGLA02G0087100.12e-87(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-27ERF family protein